sunny mishra wrote:
Hi All,
My protein has lots of missing residues and in every chain there are 4-5
missing residues with atom name. I can see missing residues with the
help of Swiss PDB Viewer after I load the pdb file. I am very new in
Swiss PDB viewer and I would highly appreciate if anyone can let me know
how to fix the missing residues or add the missing residues in the
original PDB file using swiss pdb viewes before I start my simulations
in GROMACS.
If you save the layer in Swiss PDBViewer, the .pdb file will contain the missing
atoms that have been added. Missing residues are entirely different issue. You
will have to use a program like Modeller or Loopy to re-build any missing residues.
-Justin
Thanks,
Sunny
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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