sunny mishra wrote:
Hi,
I have a quick question. My system exploded when I tried to run the
simulation and it gives me the LINCS warning. I am using MARTINI
forcefield and finally I get segmentation fault. I don't know that what
are the factors do i need to change to get rid of the LINCS warning.
Please let me know. I also tried changing the large Van Der Waal
distance but it doesn't work either. Do you have any idea?
General answer: your system is unstable. Changing cutoffs haphazardly is a
recipe for failure; these values are often intimately linked to the validity of
the force field. You will probably have to provide more information on what you
are doing (system description, as well as your .mdp file). Now that the mailing
list search is functioning again (officially), you should be able to search the
list archive. LINCS errors are posted weekly, if not daily sometimes!
-Justin
Sunny
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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