Nkwe Monama wrote:
Dear all,
I have been trying to install gromacs on my IBM E1350 linux cluster (amd86_64).
I've managed to run cofigure without any error but I get the following error
during make step.
mpicc -DHAVE_CONFIG_H -I. -I../../src -I../../include
-DGMXLIBDIR=\"/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/share/top\"
-I/CHPC/home/chpc/Test/oscar/fftw-3.1.3/include -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -MT grompp.o -MD -MP
-MF .deps/grompp.Tpo -c -o grompp.o grompp.c
mv -f .deps/grompp.Tpo .deps/grompp.Po
/bin/sh ../../libtool --tag=CC --mode=link mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib -o grompp grompp.o libgmxpreprocess_mpi.la ../mdlib/libmd_mpi.la ../gmxlib/libgmx_mpi.la -L/usr/X11/lib -lnsl -lfftw3f -lm -lX11
mpicc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -funroll-all-loops -std=gnu99 -o grompp grompp.o -L//CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib ./.libs/libgmxpreprocess_mpi.a -L/usr/X11/lib ../mdlib/.libs/libmd_mpi.a /CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/gmxlib/.libs/libgmx_mpi.a ../gmxlib/.libs/libgmx_mpi.a -lnsl /CHPC/home/chpc/Test/oscar/fftw-3.1.3/lib/libfftw3f.a -lm -lX11
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld: skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/X11/lib/libX11.so when searching for -lX11
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld:
skipping incompatible /usr/X11/lib/libX11.a when searching for -lX11
/usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin/ld:
cannot find -lX11
collect2: ld returned 1 exit status
make[3]: *** [grompp] Error 1
make[3]: Leaving directory `/CHPC/home/chpc/Test/oscar/gromacs-4.0.5/src/kernel'
make[2]: *** [all-recursive] Error 1
Please help.
Having you tried configuring --without-x ?
-Justin
Regards,
Nkwe
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
_______________________________________________
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/mailing_lists/users.php
