you could try to write your top files in the working directory and use pdb2gmx -ff option. By default, gromacs first searches in the working directory.
amit On Sat, Nov 14, 2009 at 9:05 AM, Jiang Zhu <[email protected]> wrote: > Dear all, > > I have been a GROMACS user for some time but this is my first time > to handle a modified residue with an additional chemical group linked to the > side chain. I do not have the permission to change/add the topology file in > the system directory where GROMACS package is located. I am wondering if > there is any other way to force pdbgmx to read residue topo file from > specified location or other tricks I can play. Thanks for your help! > > Best regards, > Jiang > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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