Hi, RMSD is given at a specific time, so you can ran g_rms for each residue (create index file witha specific residue in) and then take the RMSD of each residue at time T and plot it.
But I think you should look into g_rmsf, this might fit you better, although it calculate the fluctuations rather that the distance. Best, Itamar On Mon, Nov 30, 2009 at 1:37 AM, rituraj purohit <[email protected]>wrote: > Dear friends, > I am able to plot, RMSD between Time (ps) by following command by using > GRACE.. > > g_rms -s md.tpr -f md.xtc > xmgrace rmsd.xvg > > How we can I plot a graph betwwen RMSD and residue no ..?? > My aim is to find RMSD at each residues. How i can do that? > > looking forward for u r important suggestions. > > Thanking you > > Regards > Rituraj > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
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