ksm tprk wrote:
I changed pdb file after that I generated topology file.
It appears you are relying on grompp to figure out what parameters should be
used for these angles, and apparently, given these atom types, there are no
default values available in the force field you've chosen to use. So either
specify parameters manually or use a different force field.
If you need further advice, it would be useful to know the force field you're
trying to use and see the problematic lines of the topology alongside the
modified coordinate file.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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