Quoting afsaneh maleki <maleki.afsa...@gmail.com>: > Hi, > > I am working on the simulation of protein memberane. > > How can I calculate MSD (mean squar displacement) of bond lipid ( as those > phosphate atomes are written 0.35 nm of protein)? > I know that I must use g_msd for calculating, but I need index file that > is included phosphate atoms within 0.35 nm of protein. how can I obtain this > index file >
Please see g_dist -dist. -Justin > > thanks in advance, > Afsaneh Maleki > ======================================== Justin A. Lemkul Graduate Research Assistant Department of Biochemistry Virginia Tech Blacksburg, VA jalem...@vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/ ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
