Hello, I am trying to determine the precise energies of a particular protein docking configuration. I have used the docking program FlexX to determine a potential binding mode. However, I am also trying to use AutoDock, and I am having a problem running AutoDockTools (ADT). Although the problem is not directly related to GROMACS, I was unable to get any help from the AutoDock mailing list.
I have AutoDockTools (version 1.5.6) installed on my computer (Red Hat Enterprise Linux) but it does not run; version 1.4.3 of ADT seems to work, but versions 1.4.4 onward do not work, and output the following error message: =========================================================== $ ./adt setting PYTHONHOME environment Run ADT from /home/user/MGLTools-1.5.6/MGLToolsPckgs/AutoDockTools Resource file used to customize PMV: /home/user/.mgltools/1.5.6/Pmv/_pmvrc libGL warning: 3D driver claims to not support visual 0x4b could not import _glextlib Segmentation fault (core dumped) $ =========================================================== I tried to build ADT from source, but it still did not work. What does the "Segmentation Fault" mean? Please help on how to resolve this problem. Thanks, Nancy
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