It is easy to make one yourself. I would use molden to draw ammonia and save
as pdb file. You might need to minimize before using for md.
Abu
> Date: Thu, 31 Dec 2009 16:21:29 -0500
> From: [email protected]
> To: [email protected]
> Subject: [gmx-users] pdb file for ammonia
>
> Does anyone know where I can get a pdb file for ammonia? I tried
> searching but I am not sure if there is a website for the pdb files I
> can use in gromac. Any suggestions would be helpful.
>
> Thanks.
>
> Nisha
>
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