afsaneh maleki wrote:
Hi,
I am working on protein membrane that the lipid have one the
_unsaturated _bond on C9-C10.The force Field used is _united atom_.
I have some questions.
1- Is Sc-c (order parameter) valid for this lipid that contains the
unsaturated bond?
Please see the -unsat option of g_order, and the accompanying warning about its
use.
2- How to i calculate Sc-c ?
Use g_order.
3- When i use g_order -order , i obtain order.xvg file that contains 4
columns . What are the last third columns?
Check the header of the .xvg file; data sets are usually labeled quite clearly.
-Justin
thanks in advance very much,
Afsaneh Maleki
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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