I believe pdb files (protein data bank) are only for peptides, so unless you are simulating a peptide you will not need any pdb files for your SiO2. Your structure file (.gro) for SiO2 may be in the fftw library files (or whatever forcefield you're using). Hope that helps.
Arden Perkins On Tue, Jan 12, 2010 at 3:23 AM, Batistakis, C. <[email protected]> wrote: > Dear all > > > > I am a new user of Gromacs. I am interested to simulate amorphous SiO2 and > I would like to know if someone can send me the .pdb and .top files. > > > > Thanks in advance > > > > Chrysostomos > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php >
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/mailing_lists/users.php
