On 08/02/10 19:40, bharat gupta wrote:
Thanks for the help mdrun step is going on now .. but I wanna ask one
thing that how can I visualize the minimized structure ..
Search the GROMACS webpage for visualisation software suggestions.
The
structure which I used initially is the minimized structure or not ??
That's up to you - you wrote (and kept a record of) the grompp command
line, remember?
Mark
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