Dear Gromacs Users,
I am having similar problem that was reported by Sarah about a year ago. I am
using Gromacs4.0.7. I am using the following command to make the index file.
make_ndx -f dppc128.gro -o sn1.ndx
> a C34
> a C36
> ...
> a C50
> del 0-2
> q
I am using following command to calculate the order parameter.
g_order -n sn1.ndx -od
I am using all other default input file names. I am only getting two output
files: sg-ang.xvg and sk-dist.xvg, no order.xvg.
I am not sure how to get around this.
I would really appreciate any help.
Thanks,
Jayeeta
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