On 26/03/2010 3:49 PM, 程迪 wrote:
Hi, everyone
I have two simulations which could run well separately. Now I want to
place the box of simulation A onto the box of simulation B. What should
I do to realise that?
I've tried to copy and paste the .gro and .top file together, but there
are several mistakes in grompp. I wonder if there are some better method
to merge 2 simulation boxes.
It's probably simpler to build that composite simulation box from
scratch. Use editconf to do the translation/rotation of your solutes,
then do the copy-paste on the coordinate file, then generate solvent,
then copy-paste the .top together suitably, adjusting molecule counts
appropriately.
There's no tools to make easy your task as described, because it's not
something you'd really want to do often.
Mark
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