In case you use the GIT version of the analysis tools you don't need to convert the trajectories first. I've added that the analysis tools can read all vmd supported file formats if GROMACS finds the vmd libraries.
Roland On Fri, Apr 16, 2010 at 11:33 AM, XAvier Periole <[email protected]> wrote: > > Well I guess you want to use gmx analysis tools so you'll have to > build the gmx topology of your system when necessary! Often > only a pdb file or a gro file is sufficient. > > > On Apr 16, 2010, at 5:24 PM, ram bio wrote: > > Thanks Xavier, >> >> Could you make it more eloborate... >> >> Ram >> >> On Fri, Apr 16, 2010 at 4:38 PM, XAvier Periole <[email protected]> wrote: >> >>> >>> VMD reads Desmond trajectories and writes GMX format ... >>> Rests the topology to deal with ... >>> >>> On Apr 16, 2010, at 4:15 PM, ram bio wrote: >>> >>> Dear All, >>>> >>>> I have run a dynamics of protein ligand complex in lipid bilayer dppc >>>> using desmond software and would like to convert the trajectory files >>>> files into gromacs format, is it possible?? if so, please let me know >>>> your suggestions. >>>> >>>> Thanks, >>>> >>>> Ram >>>> -- gmx-users mailing list [email protected] >>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>> Please search the archive at http://www.gromacs.org/search before >>>> posting! >>>> Please don't post (un)subscribe requests to the list. Use the >>>> www interface or send it to [email protected]. >>>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >>>> >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at http://www.gromacs.org/search before >>> posting! >>> Please don't post (un)subscribe requests to the list. Use thewww >>> interface >>> or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >>> >>> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at http://www.gromacs.org/search before >> posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php >> > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at http://www.gromacs.org/search before posting! > Please don't post (un)subscribe requests to the list. Use thewww interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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