ithu wrote:
Hi. I am trying tu run a protein under the ffamber99 force field.
Has anyone used a topology of phosphoserine and phosphothreonine for
this force field?
Try here:
http://www.pharmacy.manchester.ac.uk/bryce/amber#pro
Although the topologies are in AMBER format, but with some work in a text editor
you should be able to build suitable topologies or .rtp entries.
-Justin
Thanks,
Esteban
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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