Hello,

I have a concern regarding what -settime actually does. I ran replicates of same simulation with different starting trajectories, basically to get more sampling. Now I wish to combine all the .xtc files from each replicates so I can analyze it as a whole. Now what's the difference if I combine the .xtc files using just trjcat -f md.xtc md1.xtc....mdN.xtc -o whole.xtc or if I use -settime option. Any insights would be appreciated.

Thanks

Nisha P

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