On May 15, 2010, at 9:28, shahab shariati <[email protected]> wrote:

Hi gromacs users

I want compare simulation of protein with simulation of protein-dna.

should conditions (mdp file[T, P, dt, steps, ......] and box size) be same in two simulations?
Besides the box size, which be reduced, all the rest should be the same except for partilar purpose.

thanks alot
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