----- Original Message -----
From: Carla Jamous <[email protected]>
Date: Tuesday, June 1, 2010 17:48
Subject: [gmx-users] g_energy & graph .xvg
To: Discussion list for GROMACS users <[email protected]>

> Hi everyone, 
> please  I have a practical question that may sound stupid but I can't figure 
> out the answer.
> 
> When I run g_energy 
> I type the Energies I need, for example:
> 10 (Potential)
> 14 (Kinetic)
> 
12 (Total)
>  
> My problem is even though I get the averages of the 3 energies on my screen, 
> I can't get the three energies on the same graph (.xvg file).

Well they have wildly different values, so plotting all three together means 
you can't see any fluctuations, so you might as well just look at the 
averages... If you want all three with fluctuations, then you'll need to play 
with the plotting program's functionality for representations and axes (for 
xmgrace). See http://www.gromacs.org/Documentation/How-tos/Graphing_Data for 
various ideas on plotting.

Mark
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