I assume you meant to send this to the list, so I will CC the message there.
Rabab Toubar wrote:
Hi
Trying to extract the protein from the md run without waters, all the mailing
lists suggests using an index file before running trjconv, but I get file
input/output error
Can someone give me more details on how to egt the index file
You do not need an index file to extract a default group (i.e., Protein). See
here:
http://www.gromacs.org/Documentation/Terminology/Default_Index_Groups
-Justin
Thanks
Rabab
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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