Hi everyone, please I'm doing for the first time a covariance analysis. I followed this tutorial: http://nmr.chem.uu.nl/~tsjerk/course/molmod/analysis1.html<http://nmr.chem.uu.nl/%7Etsjerk/course/molmod/analysis1.html>
But I don't understand. -proj gives the projection of the trajectory on the first eigenvector, so I was expecting to have new coordinates for each atom or each residue. Instead, I get a .xvg file saying: ""projection on eigenvectors (nm)" @ xaxis label "Time (ps)" yaxis label "vec 1" Please can anyone tell me what this actually means? What data is in nanometers? What does gromacs project? Sorry if my question is stupid, but I can't find the answer. Thank you. Carla
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