P.R.Anand Narayanan wrote:
Dear Mark, Thank you for the timely help. Can you please let me know the exact syntax or pdb2gmx command which is generally used involving .rtp as the input?



An .rtp file is read after you have made your selection for the force field. It would be more useful (and probably faster for you) if you post exactly what you tried (command line, exact error message, etc).

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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