Hi There, I am using x2top to build topology for a molecule using oplsaa forcefield from a pdb file. I have added a few entries in the n2t file but i have got a wrong topology as some additional bonds are made in the molecule. As far as I know x2top ignores the connect information of the atoms. Is it possible to modify the x2top code so that it reads the connect information and then build bonds . Also, if I make some changes in the x2top code, do I need to compile it the whole gromacs package again or whether I can compile it separately?
Thanks, Pankhuri
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