my header starts as
# g_sas is part of G R O M A C S:
#
# GROtesk MACabre and Sinister
#
@ title "Area per residue"
@ xaxis label "Residue"
@ yaxis label "Area (nm\S2\N)"
@TYPE xy
1 0.846565 0.312334
2 0.598 0.189911
3 0.837035 0.363443
4 1.14936 0.304359
5 0.630063 0.233607
6 0.625571 0.321569
7 0.261401 0.240533
8 0.0940011 0.0872611
i`m not able to understand what the second and third column represents....
On Fri, Jul 30, 2010 at 4:33 PM, Justin A. Lemkul <[email protected]> wrote:
>
>
> Anitha wrote:
>
>> In the headers file also i didn`t get the answer about those lines....
>>
>>
> Well, what do they say?
>
> -Justin
>
> On Fri, Jul 30, 2010 at 4:01 PM, Justin A. Lemkul <[email protected]<mailto:
>> [email protected]>> wrote:
>>
>>
>>
>> Anitha wrote:
>>
>> I executed the following command.
>>
>> g_sas -s topol.tpr -f traj.xtc -or resarea.xvg -o area.xvg
>> xmgrace -nxy resarea.xvg
>>
>>
>> I have chosen the protein group for surface calculation and output.
>> I get two sets of values: one is bigger (black) than the other
>> (red).
>>
>> I have checked the manual and other sources, but I could not find
>> an
>> answer about the black and red line. What does red and black
>> line shows?
>>
>>
>> Read the headers of the .xvg file.
>>
>> -Justin
>>
>>
>> -- S.Anitha
>>
>>
>> -- ========================================
>>
>> Justin A. Lemkul
>> Ph.D. Candidate
>> ICTAS Doctoral Scholar
>> MILES-IGERT Trainee
>> Department of Biochemistry
>> Virginia Tech
>> Blacksburg, VA
>> jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
>>
>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>
>> ========================================
>> -- gmx-users mailing list [email protected]
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>>
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>>
>>
>>
>> --
>> S.Anitha
>>
>>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
> gmx-users mailing list [email protected]
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
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--
S.Anitha
--
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