Hi,
I'm trying to install the newest beta on our university's supercomputer, but I'm
encountering an error during compilation. It's an aging system, so this might
be somewhat difficult to solve. Here are the specs:
Mac OSX 10.3
2.3 GHz PowerPC 970FX processors
gcc 3.3
fftw 3.0.1
Configuration went without a hitch, with config.log indicating all necessary
headers, libraries, etc. were found.
./configure --prefix=/home/rdiv1001/gromacs-4.5_beta1
CPPFLAGS="-I/home/rdiv1001/fftw-3.0.1/include"
LDFLAGS="-L/home/rdiv1001/fftw-3.0.1/lib" --program-suffix=_4.5_beta1
--disable-threads
Compilation fails with the following:
Making all in selection
...
/bin/sh ../../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I.
-I../../../src -I/usr/include/libxml2 -I../../../include
-I/home/rdiv1001/fftw-3.0.1/include -O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -faltivec -funroll-all-loops -std=gnu99 -mcpu=7450 -mtune=970
-MT sm_keywords.lo -MD -MP -MF .deps/sm_keywords.Tpo -c -o sm_keywords.lo
sm_keywords.c
cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2
-I../../../include -I/home/rdiv1001/fftw-3.0.1/include -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -faltivec -funroll-all-loops -std=gnu99
-mcpu=7450 -mtune=970 -MT sm_keywords.lo -MD -MP -MF .deps/sm_keywords.Tpo -c
sm_keywords.c -o sm_keywords.o
In file included from sm_keywords.c:41:
/usr/include/regex.h:68: error: parse error before "regoff_t"
/usr/include/regex.h:78: error: parse error before "regoff_t"
/usr/include/regex.h:124: error: parse error before "regmatch_t"
make[4]: *** [sm_keywords.lo] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1
Any ideas for a fix?
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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