ithu wrote:
Hi everybody,
I want to apply a coulombic potential between charged residues in a
coarse-grain model, but between residues that belong to different chains
of a protein complex. Both chains are name as molecule A and molecule B
in the topology file.
What specific problem are you having? In order to get useful advice, you'll
have to describe exactly what you're doing and why it's not working when you
think it should. A variety of models for treating electrostatic interactions
are available in Gromacs.
-Justin
Thank you very much,
Esteban
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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