Hello,

I have a question about how gromacs assigns VDW radii for ions. I checked the vdwradii.dat file but it does not mention any ions, so where do the parameters for ions come from? I got the .pqr file for sodium and I got the atomic radii of 1.6652A, I am not sure where that value came from.

I would really appreciate some help!

Thanks.

-Nisha P

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