Nilesh Dhumal wrote:
Hello,
I have a system with a glucose molecule and 256 water molecules.
I want to find out the number of hydrogen bond between the hydrogen atom
of OH group of glucose and the oxygen atom of water.
How can I make the index file.
Type "help" at the make_ndx prompt for examples. These groups are very easy to
create by specifying the desired atom names.
-Justin
Thanks
NIlesh
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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