First off I am using gromacs 4.5. I will also post all of my files and errors if they help.
If I run a protein in GROMOS96 all my md runs complete succesfully. But if I change to any of the AMBER force fields I get LINCS errors in my positional restraint md run. I have tried using shake, 1 fs step sizes, -heavyh, and many more. Does anyone know what is going on here?
The reason I want to use AMBER is the fact that I want to run md on the 30s rybosome and amber converts RNA much easier than GROMOS force fields.
Thank you in advance,
TJ Mustard Email: musta...@onid.orst.edu
Cell: 509-879-4173
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