Hi, either install as root by running: sudo make install
or rerun the installation steps with ./configure --prefix=$HOME/usr to install it in your home directory. Roland 2010/10/1 ahmet yıldırım <[email protected]> > Dear justin, > > Thanks for your reply. I did that you said. I tried to install Gromacs > 4.5.1but I failed it. I enter this line " > a...@ab-desktop:~/Masaüstü/gromacs-4.5.1 > make install " in terminal. What can I do? I am sorry. I am a new user. > > Thanks in advance > > 1. I installed fftw 3.2.2 > a...@ab-desktop:~/Masaüstü/ cd fftw-3.2.2 > a...@ab-desktop:~/Masaüstü/fftw-3.2.2 > a...@ab-desktop:~/Masaüstü/fftw-3.2.2 ./configure --enable-threads > --enable-float > a...@ab-desktop:~/Masaüstü/fftw-3.2.2 make > a...@ab-desktop:~/Masaüstü/fftw-3.2.2 make install > > 2. I tried to install Gromacs 4.5.1 > a...@ab-desktop:~/Masaüstü/ cd gromacs-4.5.1 > a...@ab-desktop:~/Masaüstü/gromacs-4.5.1 > a...@ab-desktop:~/Masaüstü/gromacs-4.5.1 ./configure > a...@ab-desktop:~/Masaüstü/gromacs-4.5.1 make > a...@ab-desktop:~/Masaüstü/gromacs-4.5.1 make install > Making install in include > make[1]: Entering directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > Making install in . > make[2]: Entering directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > make[3]: Entering directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > make[3]: Nothing to be done for `install-exec-am'. > test -z "/usr/local/gromacs/include/gromacs" || /bin/mkdir -p > "/usr/local/gromacs/include/gromacs" > /bin/mkdir: cannot create directory `/usr/local/gromacs': Permission denied > make[3]: *** [install-pkgincludeHEADERS] Error 1 > make[3]: Leaving directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > make[2]: *** [install-am] Error 2 > make[2]: Leaving directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > make[1]: *** [install-recursive] Error 1 > make[1]: Leaving directory `/home/ab/Masaüstü/gromacs-4.5.1/include' > make: *** [install-recursive] Error 1 > > > > 2010/10/1 Justin A. Lemkul <[email protected]> > > >> >> ahmet yıldırım wrote: >> >>> Hi, >>> >>> I've installed GROMACS 4.0.3 and MPI libraries using Ubuntu 9.04 Synaptic >>> Package Manager. What else should I do? >>> I want to run a simulation in parallel on a single PC. Which commands >>> should I enter the terminal? >>> >>> >> If I were you, I would uninstall this version (which is outdated by nearly >> 2 years!) and get version 4.5.1. Installing from source is quite easy. Not >> only will you benefit from hundreds of bug fixes and enhancements, but >> running in parallel on a multi-core machine is no longer MPI-dependent, >> making it somewhat easier. >> >> For usage and instructions, see the manual and any of the numerous >> tutorials linked here: >> >> http://www.gromacs.org/Documentation/Tutorials#General >> >> -Justin >> >> >> Thanks a lot for any instruction. >>> >>> >>> >> -- >> ======================================== >> >> Justin A. Lemkul >> Ph.D. Candidate >> ICTAS Doctoral Scholar >> MILES-IGERT Trainee >> Department of Biochemistry >> Virginia Tech >> Blacksburg, VA >> jalemkul[at]vt.edu | (540) 231-9080 >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >> >> ======================================== >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > Ahmet YILDIRIM > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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