Please keep all Gromacs-related correspondence on the gmx-users list. I am not
a private tutor.
See comments inline below.
ahmet yıldırım wrote:
Hi,
You said "Per the instructions I sent before, you need to either add the
location of your Gromacs installation to your PATH (in whatever shell
configuration file, likely .bashrc) or source GMXRC every time you log
in to a new terminal. Once your Gromacs installation is recognized by
your shell environment you can run all the commands."
Yes, so have you followed that advice? You've given no indication that you
have.
I have 1.pdb file. I want to convert 1.gro and 1.top this file using
pdb2gmx command.
*pdb2gmx –f 1.pdb –o 1.gro –p 1.top*
That's the proper command, provided that the subdirectory containing pdb2gmx is
in your PATH, which you can accomplish by doing either of the two things I have
told you to do.
Can you give an example?
a...@ab-desktop:~/usr/bin$ .............?????
Sorry, I don't understand what you're asking for here.
-Justin
Please, don't be angry with me.I am a Ph.D. student, Department of
Physics, Siirt University, Turkey.
Thanks in advance
--
Ahmet YILDIRIM
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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