shahab shariati wrote:
Hi gromacs users
I want to know after using trjconv -pbc, box disappears and solvent molecule recedes from solute. is it true?


That doesn't sound like anything normal. If you're trying to figure out what the -pbc option does, don't sit around and wait for a reply to an email - try it. If you're having a specific problem as a result of using trjconv, describe specifically what you did, what you observed, and why you think it's wrong.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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