On 06/11/10 07:46, Mark Abraham wrote:
On 6/11/2010 4:02 PM, bharat gupta wrote:
Hi all ,
Whenever i am running the genbox command I am getting the following
error :-
genbox -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top
:-) G R O M A C S (-:
Segmentation fault (core dumped)
The most likely scenario is some shared library is not available when it
should be. That means the environment in which you ran the above command
is different from the one in which GROMACS was built. That means
most/all GROMACS commands will fail. A possibility is that there's a bug
in GROMACS, but I doubt it. Do other GROMACS commands, or other genbox
runs work?
A missing library should show explicitly as such, not as a segfault. I
suspect some compilation glitch. What compiler did you use? On what system?
A good idea would be to run the command through gdb.
Mark
Can anybody tell me whats the reason for such an error ...
--
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : [email protected] <mailto:[email protected]>
--
Massimo Sandal, Ph.D.
http://devicerandom.org
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