All hydrogen bonds analysed in the index group you selected from *.ndx
Catch ya, Dr. Dallas Warren Medicinal Chemistry and Drug Action Monash Institute of Pharmaceutical Sciences, Monash University 381 Royal Parade, Parkville VIC 3010 [email protected] +61 3 9903 9304 --------------------------------- When the only tool you own is a hammer, every problem begins to resemble a nail. From: [email protected] [mailto:[email protected]] On Behalf Of shahab shariati Sent: Tuesday, 9 November 2010 1:56 AM To: [email protected] Subject: [gmx-users] g_hbond / lifetime Dear all I used g_hbond for analysis of hydrogen bonds between protein-ligand complex. g_hbond -f *.xtc -s *.tpr -n *.ndx -num -g -ac -dist -ang -hx -hbn -hbm -don -dan -life -nhbdist after using g_hbond, gromacs gives me: HB lifetime = 16.82 ps this lifetime is related with what hydrogen bond?
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