shahab shariati skrev 2010-11-10 10.48:
Dear gromacs users
I used g_hbond -f *.xtc -s *.tpr -n *.ndx -hbm hbmap.xpm for hydrogen
bond analysis.
then I used xpm2ps -f hbmap.xpm -o hbmap.eps.the ps file is hydrogen
bond index vs time. I don't understand numbers in vertical axis. do
these numbers in vertical axis relate to hbond.ndx file? how?
Each line is one DHA-trad in the ndx-file. The order is the same in the
matrix and the ndx-file, but keep in mind that the matrix is displayed
with the first row at the bottom.
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-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: +46 18 471 4537 fax: +46 18 511 755
[email protected] http://folding.bmc.uu.se/
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