Dear Gromacs Users,
I am simulating a Membrane protein, the extracellular domain alone (since the
structure of only extracellular domain is solved). So I will have to simulate
the protein in such a way that only the translational motion is allowed but the
rotational motions are prevented (which would mimic the behavior of the protein
attached to the membrane).
The protein is expected to former dimer and multimers on the cell surface, so I
want to restrict motion only to 2D. This would give an idea as to how the
protein clusters on the membrane surface (studying this multimerization looks
too ambitious, but want to make an attempt).
Best,
nahren
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