Hi Ithayaraja, That's not an error in pdb2gmx. It's an error in your input file. One of your residues (H341) is not complete. This is the first thing to check when going for a simulation. You'll have model the missing atoms in before you can proceed.
Cheers, Tsjerk On Wed, Nov 24, 2010 at 5:09 AM, ITHAYARAJA <[email protected]> wrote: > Hi Dear, > > I found a fatal error as I running pdb2gmx command, Which shows that > incomplete ring in HIS341. I am very confused what it's meant and how do i > solve the problem? > > Please any body give me a reasonable solution for that > > thank you > > -- > -- > > With love and gratitude of, > > Ithayaraja M, > Research Scholar, > Department of Bionformatics, > Bharathiar University, > Coimbatore 641 046, > Tamil Nadu > India > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
