Hi, There is a bridging waters TCL script available for VMD which may be useful. It can be found at http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/bridging_waters/
-- Tim Causgrove Associate Professor Texas A&M University - Corpus Christi 6300 Ocean Drive, Unit 5802 Corpus Christi, TX 78412 361-825-2399 > Date: Wed, 24 Nov 2010 18:37:45 +0330 > From: leila karami <[email protected]> > Subject: [gmx-users] perl script for g_hbond / summary_HBmap.dat > To: gmx-users <[email protected]> > Message-ID: > <[email protected]> > Content-Type: text/plain; charset="iso-8859-1" > > Dear Erik and Justin > > Thank you so much for ypur help. > > yes I mean water mediated hydrogen bonds (protein-H2O-dna). > > since I'm beginner in perl script, please clarify your answer and explain > more. what is your mean of > existence functions exactly? > > do using of -ins option in g_hbond tool help me? > > > -- > > Leila Karami > Ph.D. student of Physical Chemistry > K.N. Toosi University of Technology > Theoretical Physical Chemistry Group > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > http://lists.gromacs.org/pipermail/gmx-users/attachments/20101124/42b2e41d/att > achment-0001.html -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
