Hello all! I would like to insert a molecule to a membrane system and would like to start from a specific position of the molecule (hydrocarbon or lipid headgroups). I tried doing that in Pymol after converting the merged gro into pdb (using editconf) but when I saved the file in Pymol the order of the lipids atoms got mixed up and it does not match the dppc.itp anymore. Then it caused problems in grompp. Do you have another way to set the position of the molecule in the system? maybe without converting to PDB...??
Thanks, Adva. -- Adva Yeheskel Bioinformatics Unit Rm 001, Sherman bldg., G.S.W. Faculty of Life Sciences Tel-Aviv University, ISRAEL 69978 Tel: 972-3-6406840; Fax: 972-3-6405098 E-mail: [email protected] Web-site: http://www.tau.ac.il/lifesci/bioinformatics.html
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
