mustafa bilsel wrote:
Hi,
I have a problem with dssp programme.
I have the programme in /home/m/DSSP. When I write
export DSSP=/usr/local/bin
and then I check /usr/local/bin I couldn't see dssp.
How can I handle this problem. I have caheceked gromacs website
export DSSP=/path/to/dssp
setenv DSSP /path/to/dssp
commands are written.
Could you write export DSSP=/path/to/dssp command according to me.
The proper setting for the environment variable is explained in great detail
here:
http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp
Note the line "If this is not the case, you must set the DSSP environment
variable accordingly, pointing to the actual dssp executable, not just the PATH
to it."
And also I use Ubuntu 10.04, setenv is not used, if I try to install it, I
see the package not found message.
What should I do about it?
Learn what your shell uses and apply it. You're more than likely running bash,
in which case "export" is the command to use.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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