Hi All, I ran into a problem when running the methanol example in "Getting Started". When I ran "grompp -v", I got the following:
Fatal error: Atomtype CMET not found I installed Gromacs 4.5.3 on Ubuntu and planned to learn the software. Now I am stuck. Many thanks for your help! I really appreciate it. Mao On Wed, Jan 5, 2011 at 4:41 PM, Justin A. Lemkul <[email protected]> wrote: > > > Mao Mao wrote: > >> Hi All, >> I am a new user of Gromacs and Linux. I am using Ubuntu 10.10 and >> installed Gromacs 4.5.3 following the instructions. When I ran the demo, I >> found that when I pressed <enter>, the xterm window which is supposed to >> appear separately just flashed and disappeared immediately. For instance, >> "the output of the genbox program should appear in a separate xterm window", >> but when I pressed <enter> the window flashed and disappeared immediately. >> Is there anything wrong that I need to fix or is that the way it should be? >> > > It is possible that something is wrong with the demo, but more likely > something is wrong with your X window settings. If you're looking for > tutorial material, there are far better resources than this simple > walkthrough: > > http://www.gromacs.org/Documentation/Tutorials > > -Justin > > Best, >> Mao >> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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