Hi, Yes, g_membed is the right tool for you. Please read the paper Wolf et al, J Comp Chem, 31 (2010) 2169-2174. You will find a detailed description of the insertion method and a quick manual. It will save you a lot of headache.
Regards, Christopher 2011/1/24 Mohana lakshmi <[email protected]> > Dear all > > I am trying to run simulation of transmembrane protein, i am looking > for better ways to setup protein with lipid membrane. initially i used VMD > to insert protein with lipid membrane but it did not come out well, i got > errors while running position restraint. i read about g_membed tool in > gromacs, is it helpful for setting up transmembrane proteins also? Is there > any other better ways to insert protein perfectly into the membrane? Please > help me to overcome this problem..... > > > > Thanks and regards > -- > > > Mohanalakshmi N > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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