Aldo Segura wrote:
Thanks for your answer. You're right in the procedure for the packing
of the protein and lipids. However, after several iterations (~30) the
lipids are packaged to form the bilayer and the protein is outside of
it. I can send you a couple of pictures for a better explanation of my
problem.
That typically happens when either (1) the box vectors are not set correctly
during system construction or (2) the protein is not properly positioned in the box.
-Justin
Best regards,
Aldo Segura-Cabrera
Laboratorio de Bioinformática
Centro de Biotecnología Genómica
Instituto Politécnico Nacional
Blvd. Del Maestro esquina Elías Piña, 88710
Reynosa, Tamaulipas, México.
(899)9243627 ext. 87747
e-mail: [email protected]; [email protected]
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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