Hi, I've used g_confrms from gromacs-4.5.1 to compare two structures with the following command line -
g_confrms -f1 1OMB.pdb -f2 md.gro -o fit.pdb fit.pdb is supposed to be the output file which would show the 2 structures superimposed on each other. But when I visualised it with vmd. I can only see one structure. Any idea what's going on? I hereby attached part of the generated fit.pdb. All suggestions are welcomed. Regards, Joyce
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