Majid,
Can you post the exact executions you did.
ie
grompp ......
mdrun ......
This will help alot.
On February 12, 2011 at 7:29 PM majid hasan <[email protected]> wrote:
Dear All,I installed the gromacs on Ubuntu, and ran the demo. But every time it produces an output file, I get this error: "output.pdb2gmx: Permission denied.", so I can't view the output. I am also unable to locate the .trr file, which is supposed to be the ultimate output of demo. Could anyone please tell me what do I have to do avoid this error, and how do I get to .trr file?Thanks,Majid
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