John wrote:
Hello,
While trying to visualize a MARTINI protein/trajectory in VMD, I came
across the script top2psf.pl <http://top2psf.pl>. i attempted to use it as:
> ./top2psf.pl <http://top2psf.pl> -i martini.top -o martini.psf
this generates the error:
> Cannot open atoms for reading: No such file or directory
Anyone encounter this or have any suggestions for visualizing MARTINI
proteins in VMD? Thank you for any help.
The required input is the actual protein topology (usually an #included .itp
file within the .top).
-Justin
-j
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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