Hello, I have run a few protein systems through simulations of varying lengths and would like to find a way to visualize the trajectories. I have tried to use the top2psf.pl script to produce a usable .psf file. I can get it to produce the .psf file, but am unable get VMD to display anything for the trajectory other than a bunch of dots.
anyone had any luck displaying MARTINI trajectories with VMD and might know where i am going wrong? any suggestions are very appreciated. -john
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