sakthi kumaran wrote:
Dear all,
Hi I am new to gromacs. I want to calculate the Van der waals interaction between two capped CNT facing each other using the pairwise LJ potential.I haven't used gromacs already. Any know-how/procedures to do the requiste would be very helpful.Whether Any tutorials are available for such a kind of thing...

Running a simulation while setting proper energygrps to decompose short-range nonbonded interactions sounds to be what you need to do.

-Justin

Thank you in advance guys

--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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