Dear All
I want to calculate RMSD of one side chain residue from simulation trajectory after full backbone alignment as well as translating to coincide CA of the residue of interest. Is it possible to do with g_rms both backbone alignment as well as translating to coincide CA. Another clarification is that in gromacs g_cluster how can I use greedy algorithm for clustering. Shahid Nayeem -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
