Thanks so much ... that's great!! :) Hopefully problem solved! Natalie
________________________________________ From: [email protected] [[email protected]] on behalf of Justin A. Lemkul [[email protected]] Sent: 03 March 2011 10:50 To: Discussion list for GROMACS users Subject: Re: [gmx-users] Problems with pull simulation output - VMD shows broken up groups Justin A. Lemkul wrote: > > > Natalie Stephenson wrote: >> >> Hi, >> >> I've been having a problem with the pull simulation. After the >> simulation is complete, I use trjconv to separate the pull file into >> seperate .gro's and load this into VMD. When I view it in VMD as the >> 'video' continues parts of amino acids within the protein structure >> seem to jump a long way from the rest of that amino acid leaving a >> long bond between the two, which seems to remain there for the rest of >> the 'video'. Can anyone tell me why this might be happening? And if >> there is a way of solving this problem? >> >> I tried to have a look through the archive for this problem but I have >> no idea what to even search. >> >> I would be immensely grateful for any light you could shed on this >> problem. >> > Sounds like FAQ #11. http://www.gromacs.org/Documentation/FAQs -Justin >> Thanks in advance. >> Natalie >> >> > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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